Gene putatively regulated by attenuation in B_subtilis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:92 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-16.40 kcal/mol
Antiterminator: Size=46 nt.     Delta G=-10.80 kcal/mol
Anti-antiterminator:   Size=30 nt.     Delta G=-12.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTTTATCGTGATGACTACTATGACAAAGAAACCGAGAATAAAAATATTATCGAAATTA
TTATCGCCAAACAGCGTAACGGCCCGGTAGGAACCGTGTCTCTTGCGTTCGTAAAAGA
ATACAACAAATTCGTCAACCTGGAACGGCGTTTTGATGACGCAGGCGTTCCGCCCGGC
GCATAAgccccaagagctgctcttggggtttttttcattcgaaagatggaagaaatgacgttcgctcagcggatgaaaaattgaaagcgttttaat
aaaatggtgcaaaaaggagatggtaacaatATG

    Glu


Gene: yycE     GI: 16081095     BI number: BSU40430     GOG: NOG42211     Description:


            T
          T  C
           GC
           CG
           GC
           GC
          |  C
          A  G
           CG
           GC
           CG
  G       A  |
T  A       GC
T  T       TA
 TG        AT
 TA       |  A        t
 GC       |  A      c  g
 CG       |  g       gc
 GC       |  c       at
|  A      |  c       gc
|  G      |  c       at
|  G      |  c       at
 GC       G  a       cg
 CG        Ta        cg
 AT        Tg        cg
 AT        Ta        cg
 GC        Tg        gt
 GC        Gc        At
                        tttttcattcgaaagatggaagaaatgacgttcgctcagcggatgaaaaattgaaagcgttttaataaaatggtgcaaaaaggagatggtaacaatATG
    ..................................................................................................................