Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:169 nt. Distance to run of Ts=0 nt. Size=40 nt. Delta G=-17.20 kcal/mol
Antiterminator: Size=67 nt. Delta G= -9.17 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tgctttatctctttaatcaaagaattgtaaataagctatgatcaaacttttttataaaacataaacataaacataaacctgttggataagaaaccatttt
gattagactttttcaaaatggtttctttttattcatcatagaatacggtttaacacagtatttttaatcaaactttattttaaagccacacattgcgttt
tcttatggtgaatttgtttcttagttatttcctgcattttatatcgttcactaatcatgtaatgttaagggagatgacaaaagaaaggaagaatgtacaa
ATG
BT9727_0155
Gene: BT9727_0155 GI: 49476727 BI number: BT9727_0155 GOG: ------- Description: alpha/beta superfamily hydrolas
aa
a c
t a
a t
c a
a a
a a
a c
t c
at
cg
at
at
a g
a g
ta ac
at g t
ta a t
ta t t
tg t t
ta at
ta gc
ta ta
| c ta
| c ta
| a ta
c t at
at cg
at cg
at at
cg at
ta at
at gc
gt at
ta at
tttattcatcatagaatacggtttaacacagtatttttaatcaaactttattttaaagccacacattgcgttttcttatggtgaatttgtttcttagttatttcctgcattttatatcgttcactaatcatgtaatgttaagggagatgacaaaagaaaggaagaatgtacaaATG
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