Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance from promoter:106 nt. Distance to gene:55 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-10.90 kcal/mol
Antiterminator: Distance from promoter:55 nt. Size=61 nt. Delta G= -7.12 kcal/mol
Anti-antiterminator: Distance from promoter:69 nt. Size=19 nt. Delta G= -3.90 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TGGAAT-TAAAAA. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGGAATTGCTTGAATGGATTTAGTAAAAACGGAAGTGTGTATGTCGTTTTATTATCTA
ACATTCAAAACAATATTAAATCGTTTGGTAAAGTGAACAACGACATTTATACGATGTT
GCGAAATATTGAAGTGTAAgagactatccttttgggtagtttttttattgaggaagtgtatgtgcaatgagataatgaaataaatg
gaaaagggggaggggtATG
BT9727_0417
Gene: BT9727_0417 GI: 49476821 BI number: BT9727_0417 GOG: ------- Description: hypothetical protei
CG
G A
TA
TA
GT
TA
AT
GT
CG
A |
T |
A |
TA
TA
TG
AT
CG
AT
G A
C A
A g
A a
C g tt
A | t t
T A | cg
A A G | cg
T C Ta tg
TG Gc at
TA At ta
AT A a cg
CG A t at
AT T | gt
GT Gc at
CG Gc gt
tttattgaggaagtgtatgtgcaatgagataatgaaataaatggaaaagggggaggggtATG
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