Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance from promoter:82 nt. Distance to gene:23 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G=-12.60 kcal/mol
Antiterminator: Distance from promoter:18 nt. Size=79 nt. Delta G= -7.10 kcal/mol
Anti-antiterminator: Distance from promoter:1 nt. Size=52 nt. Delta G= -4.10 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttggta-taaaag. It has a score value of 65.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttggtattgatacactttttttgtaaaagaagaaatgtagtattgtctttaaagtttaatttatttacattgttacttggctatacacaaaagtaatata
ttcggtaataaaagagcgctattggatagtgctcttttttatgaatagaaaggagtgagttaaATG
BT9727_0583
Gene: BT9727_0583 GI: 49476865 BI number: BT9727_0583 GOG: ------- Description: conserved hypothetical protei
ta
a c
t a
c c
g a
g a
ta
ta
cg
at
ta
ta
gt
ta
| t
| a
tt | t
t a | t
g a t c
at a g
at cg
at at
ta ta
t t ta
t t t t
c t a a
ta ta
gc ta
ta ta
t t a g g
at a a t g
tg t g ta
gt t c at
at tg ta
ta gc cg
gc at gt
t t | a cg
a t at gc
a g at at
a g tg gc
gc tg at
at ta at
ttttatgaatagaaaggagtgagttaaATG
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