Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:125 nt. Distance to run of Ts=1 nt. Size=36 nt. Delta G= -9.40 kcal/mol
Antiterminator: Size=49 nt. Delta G=-14.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTGGTACTCAAATTGTATATACAAATAATATTACGCAAGAAGTATATGGTTCAGGTTA
CGTGAAATATGATGTAGGTACGGCTCCAATTACAGTTGATTTTTTAGTAGGTGCTACA
GTAGTTGATACAATTACTGTACAGCCGCAAAGTAGTGGTACTTTCACTGTACGATATT
TTACGACTGTCCAAATCACTACGACAGGAACAACTGTGAATCAAGGAGAGTTTTGTAT
TACAGTACGTTATCCAATTTCATAAaaaagcataccgtaaatggtatgctttttttattgaaaaagtaATG
BT9727_0724
Gene: BT9727_0724 GI: 49476930 BI number: BT9727_0724 GOG: ------- Description: hypothetical protei
T
A A
GC
TA
TA AG
GT A T
AT A A
TA CG
GC GT
AT CG
CG CG
AT | T
TA | A
C C | C
G A | T
TG | T
GC | T
GC | C
A | | A
TG GC
GC AT
A | CG
TA AT
TA TA
TA GC
TG TG
ATATTTTACGACTGTCCAAATCACTACGACAGGAACAACTGTGAATCAAGGAGAGTTTTGTATTACAGTACGTTATCCAATTTCATAAaaaagcataccgtaaatggtatgctttttttattgaaaaagtaATG
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