Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:38 nt. Distance to run of Ts=0 nt. Size=39 nt. Delta G=-22.00 kcal/mol
Antiterminator: Size=71 nt. Delta G= -5.65 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G= -4.74 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGTTAAAACTAGTCGCTACTGGTGAAACGTATAAAAATGAAATGCGGGCAAGAATTA
CTGACGGTATAGTTGCAGTAATTGCACTTTGCTACGCACTATGGGTTATTAAAACGGG
TGCAGCCGATATAAAAACGTTCCTTCTCGGAATTGGTTTATTCGTAATCGGCTTTGCT
TTCTATCCATTAATGAATCGTGATCAGAAAAAAAATAACGAAAAGAAAAACGGGCAAG
TTGCATAAcgcaatttgctcgttttttcttttgcaaaacatatataatagaacaaagaggtgaaaaacATG
BT9727_0753
Gene: BT9727_0753 GI: 49476941 BI number: BT9727_0753 GOG: ------- Description: conserved hypothetical protei
AA
A A
G A
A A
C A
T A
A T
G A
TA
GC
CG
TA
A A
A A
G |
T |
A |
A |
T |
T |
GG A |
C C C |
T T C |
AT T |
AT A | A
TG TA T A
GC CG A c
C T TA Cg
T T TA Gc
T T | A Ta
A C | A Ta
T T | A Gt
T A | C At
T T | G At
GC TG Cg
GC CG Gc
TA GC Gt
T T T | Gc
A T TA Cg
A A TA At
G A CG At
GT GT At
CG GT At
TA CG At
tcttttgcaaaacatatataatagaacaaagaggtgaaaaacATG
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