Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:29 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G= -8.70 kcal/mol
Antiterminator: Size=74 nt. Delta G= -8.19 kcal/mol
Anti-antiterminator: Size=38 nt. Delta G= -7.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGGCGAGTAATGAACAGAAAGATAAATTATTATTTGCAGAAGCTAATGTTATGTAAg
gaagtgccctcgtatgagggctatgcagatggaagatatgctgagattagagcttatgcagaatatacaggtgatcgttttgatgtataggagtctggat
ggtttggtgataaggcagttgggaatgggaccgcgttaagacctgttggaatatgtttcgtgacatatcgttaatttagtgaaaaaagaatccttagaat
tgaggattctttttcgtagtttggtagtatggtaggaaagggGTG
BT9727_0781
Gene: BT9727_0781 GI: 49476952 BI number: BT9727_0781 GOG: ------- Description: hypothetical protei
t
a g
t t
at
at
gc
| g
gt
tg
ta
gc
ta
c t
c a
at
gc
| g
at
at
ta
ta
gt
aa | t
g t | t
g g | a
g g cg
tg gt
ta cg
gc | a
a c | a
cg c a aa
gc a a g t
g g g a at
at g a tg
at g g ta
ta t a cg
a a a a cg
g g at ta
ta gc at
gc gc at
gc gt gc
tttttcgtagtttggtagtatggtaggaaagggGTG
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