Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:170 nt. Distance to run of Ts=2 nt. Size=33 nt. Delta G=-16.40 kcal/mol
Antiterminator: Size=69 nt. Delta G= -5.52 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G= -9.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGTTCGATTGCTCATACAGAAGCGTTAGTATATGCGTATGTAATGTCTAACTTAATTG
AAGAATAAtttcgtagaaaataaagaggactgattgaaaatgttatttttaatcagtcctctttattttttgagatttatatttattgttcctt
atatatttattttcagtaatacaagtagaaaacgtatttactacagtgatagaatgttataaactattataggagttatttaccaattaatattattttg
actaagagaattttataatgtgaggtttcgagaggagatttgtttttcATG
BT9727_0796
Gene: BT9727_0796 GI: 49476960 BI number: BT9727_0796 GOG: ------- Description: N-acetylmuramoyl-L-alanine amidas
G
A A
A A
GT
TA
TA
GT At
A A At
T T T t
TA T c
GT C g
CG A |
GC At
A G Ta
A T Cg
G A Ta
AT G a
CG T a
AT A |
| A A |
TA T |
AT G | t
CG Ta g t
| T At ta
| C Ta at
| T G a at
| A C a at
| A G g at
T C T a gt
C T A g ta
GT T g ta
TA A | at
TA Ta gc
AT Gc ta
GT At cg
CG Tg at
TA Ta gc
TA Gt gc
tctttattttttgagatttatatttattgttccttatatatttattttcagtaatacaagtagaaaacgtatttactacagtgatagaatgttataaactattataggagttatttaccaattaatattattttgactaagagaattttataatgtgaggtttcgagaggagatttgtttttcATG
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