Gene putatively regulated by attenuation in B_thuringiensis_konkukian

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:41 nt.    Distance to gene:53 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-12.30 kcal/mol
Antiterminator:    Distance from promoter:23 nt. Size=26 nt.     Delta G= -3.20 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G= -4.40 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: CTGAAT-GATTAT. It has a score value of 62.92 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTGAATTGCTTAATAGCTTACGTGATTATGAAGACGAGGACGAATAAttaattatgagtaacaaa
ggtaagacttatgtgtattacgcataagtctttttaatattatctcaaagttaagaagaagtttttattgtttttatagtaattaatATG

    BT9727_0812 --- BT9727_0813


Gene: BT9727_0812     GI: 49476973     BI number: BT9727_0812     GOG: -------     Description: hypothetical protein
Gene: BT9727_0813     GI: 49476974     BI number: BT9727_0813     GOG: -------     Description: hypothetical protei


 GG
A  A
 GC
 CG
A  A
G  A
A  T
A  A
G  A
T  t       aa
 At       a  g        t
 Ta        cg       a  t
 Ta        at       t  a
 At       |  a       gc
 Gt       |  a       tg
 Ta       a  g       gc
 Gt        ta        ta
 Cg        gc        at
A  |       at        ta
T  |       gt        ta
 Ta        ta        cg
 Cg        at        at
 Gt        tg        gc
                        tttttaatattatctcaaagttaagaagaagtttttattgtttttatagtaattaatATG
    ..................................................................................................................