Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance from promoter:44 nt. Distance to gene:137 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-14.20 kcal/mol
Antiterminator: Distance from promoter:35 nt. Size=20 nt. Delta G= -3.70 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G= -7.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgatt-tagtat. It has a score value of 67.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgattaaaattgtaaatgggatagtatcagatactccgaaaatttattgaagtcaattttgaagtagatgaaatcatcccctaaatgaatcgtttagag
ggtgattttttgtgatgggatttatctaactaaaacagaaaaggacaaaatctgtccaccttaattcagtataattcgatatataaaataagcgaagata
tattattttaaagctgagttttgacaaattgcttaattcaaattcgatATG
BT9727_0835
Gene: BT9727_0835 GI: 49476992 BI number: BT9727_0835 GOG: ------- Description: conserved hypothetical protei
ag
a t
gc
ta
ta
at
t |
t | a
t | a t
a | gc
a | tg
at at
at at
gt at
cg ta
c a aa cg
ta a t c a
cg gc cg
at ta cg
ta at tg
a g gc at
g a a c cg
at t c ta
cg gc at
ta at at
ttttgtgatgggatttatctaactaaaacagaaaaggacaaaatctgtccaccttaattcagtataattcgatatataaaataagcgaagatatattattttaaagctgagttttgacaaattgcttaattcaaattcgatATG
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