Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:182 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-16.90 kcal/mol
Antiterminator: Size=53 nt. Delta G= -6.35 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGAAGTTTAGGATATCCTGATGCAGGTGCGCATGCACTTGGAGTTATCTTTACGGAGA
TTGCCGGTAGTTTGAAATAGgaatgagaaagtccctttgccttaaggtgaaggggcttttatatagttggtagaagactactttc
gggctctctgtaaaatatgagtttgttactatttttgataaaattttatttcaaaaatacaactaatatttctcaatattaatatattgaaaataattag
aatatttaagataatcgtttatgaagaaagaaattataaaaaaagggggaatttattTTG
BT9727_0890
Gene: BT9727_0890 GI: 49477033 BI number: BT9727_0890 GOG: ------- Description: hypothetical protei
AT
G T
A G
GC
GC
CG
| G
| T
| A
| G
| T
| T
| T
| G
| A
| A
| A
| T
| A
| G
| g
| a
A a ta
T t t a
Tg cg
Ta cg
Cg g t
Ta t g
A | ta
Ta ta
Ta cg
G g cg
At cg
Gc tg
Gc gc
ttttatatagttggtagaagactactttcgggctctctgtaaaatatgagtttgttactatttttgataaaattttatttcaaaaatacaactaatatttctcaatattaatatattgaaaataattagaatatttaagataatcgtttatgaagaaagaaattataaaaaaagggggaatttattTTG
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