                                                                        Gene putatively regulated by attenuation in B_thuringiensis_konkukian

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:162 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-18.80 kcal/mol

                                                                        Nomenclature/Definitions

agaaacaataaaaatataaaattttcctttttagtttactgtatattctatacatatgaggttaatataatgtcttattatcggtagcaagaaaaaggcg
aattcctactttcaaaaggaattcgcctttttctttttctataatcttattcatctctttacacattcctatcatggcggtaccccatttataggttatg
agaaagggtattttttgcactattatctattcttggatattattaataatatctatatgaacttattttttattaaaaaggtttggcggtgtgtaaaatg
ATG

    BT9727_0897 Gene: BT9727_0897     GI: 49477040     BI number: BT9727_0897     GOG: COG2206,COG3437     Description: HD domain protei            t          t  c          t  a          c  a          a  a           ta           cg           cg           ta           ta           at           at           gc           cg           gc           gc           at           at             tttctttttctataatcttattcatctctttacacattcctatcatggcggtaccccatttataggttatgagaaagggtattttttgcactattatctattcttggatattattaataatatctatatgaacttattttttattaaaaaggtttggcggtgtgtaaaatgATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG2206 HD-GYP domain ... can be seen here [KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_thuringiensis_konkukian                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:169 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G=-16.30 kcal/mol Antiterminator: Size=72 nt.     Delta G= -5.90 kcal/mol Anti-antiterminator:   Size=52 nt.     Delta G= -3.90 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case agaaacaataaaaatataaaattttcctttttagtttactgtatattctatacatatgaggttaatataatgtcttattatcggtagcaagaaaaaggcg aattcctactttcaaaaggaattcgcctttttctttttctataatcttattcatctctttacacattcctatcatggcggtaccccatttataggttatg agaaagggtattttttgcactattatctattcttggatattattaataatatctatatgaacttattttttattaaaaaggtttggcggtgtgtaaaatg ATG     BT9727_0897 Gene: BT9727_0897     GI: 49477040     BI number: BT9727_0897     GOG: COG2206,COG3437     Description: HD domain protei             a           a  g           a  g           a  c           a  g           g  a            aa            at            ct   t        gc a  a       ac at        tt ta       |  a ta       |  c gt       |  t g  g      g  t at       g gc        c t  t       t at        a ta       | at       | c  |      t a  |       t t  |       a         t a  |       t       t  c t  |       t       t  a c  |      c        c  a t  |      t        a  a t  |      g         ta at       t  |       cg ta       a  |       cg at        a        ta t  |       t        ta gc       a         at tg       t         at cg        a        gc at        a        cg ta        t        gc tg        t        gc                         tttttctttttctataatcttattcatctctttacacattcctatcatggcggtaccccatttataggttatgagaaagggtattttttgcactattatctattcttggatattattaataatatctatatgaacttattttttattaaaaaggtttggcggtgtgtaaaatgATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG2206 HD-GYP domain ... can be seen here [KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain ... can be seen here     ..................................................................................................................