                                                                        Gene putatively regulated by attenuation in B_thuringiensis_konkukian

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:186 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-16.60 kcal/mol
Antiterminator: Size=51 nt.     Delta G= -9.71 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGTTAACATTGGTGAAACAGGCGGAGCACCAGCAGATAATAGAGGCGATGGTGGCGGA
GTAAGCCAACTATAAtaacaaagaaagggacctcacaacgaggtctcttttctttttacgactaaaaacaattgacttactttaaatat
gtaactataatggttacaaaataaccatcagtaatagaagtgagtaatatttttttaatataattgtaaccattatagttacagttaaaattaatcataa
aacaaccaaataatgtaaaaactttaaatagcaacaagagaaaggagacgggaATG

    BT9727_0939 Gene: BT9727_0939     GI: 49477056     BI number: BT9727_0939     GOG: -------     Description: lipase, alpha/beta hydrolase fold famil   G A  T G  A G  A CG GC GC |  A TA GC GT TA AT |  A |  A |  t |  a |  a |  c |  a        a |  a      c  a |  a      a  c |  g       cg |  a       ta |  a       cg |  a       cg |  g       at |  g       gc G  g       gt C  a       gc Gc        at Gc        at At        at Gc        gt             ctttttacgactaaaaacaattgacttactttaaatatgtaactataatggttacaaaataaccatcagtaatagaagtgagtaatatttttttaatataattgtaaccattatagttacagttaaaattaatcataaaacaaccaaataatgtaaaaactttaaatagcaacaagagaaaggagacgggaATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_thuringiensis_konkukian                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:193 nt.     Distance to run of Ts=0 nt.   Size=17 nt.     Delta G= -8.30 kcal/mol Antiterminator: Size=51 nt.     Delta G= -9.71 kcal/mol Anti-antiterminator:   Size=40 nt.     Delta G= -6.40 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case CGTTAACATTGGTGAAACAGGCGGAGCACCAGCAGATAATAGAGGCGATGGTGGCGGA GTAAGCCAACTATAAtaacaaagaaagggacctcacaacgaggtctcttttctttttacgactaaaaacaattgacttactttaaatat gtaactataatggttacaaaataaccatcagtaatagaagtgagtaatatttttttaatataattgtaaccattatagttacagttaaaattaatcataa aacaaccaaataatgtaaaaactttaaatagcaacaagagaaaggagacgggaATG     BT9727_0939 Gene: BT9727_0939     GI: 49477056     BI number: BT9727_0939     GOG: -------     Description: lipase, alpha/beta hydrolase fold famil             C           G  C           A  A           A  A            TC            GT            AA           |  T            GA            GA            Ct            Ga   A        Ga A  T      |  c T  A      |  a A  G      |  a G  A      |  a A  G      |  g CG       |  a GC       |  a |  G      |  a |  A      |  g AT       |  g CG       |  g CG       |  a AT       |  c        a |  G      |  c      c  a CG       |  t      a  c GC       T  c       cg A  G      G  a       ta G  G       Gc        cg G  A       Ta        cg CG        Aa        at GT        G        gc                         tcttttctttttacgactaaaaacaattgacttactttaaatatgtaactataatggttacaaaataaccatcagtaatagaagtgagtaatatttttttaatataattgtaaccattatagttacagttaaaattaatcataaaacaaccaaataatgtaaaaactttaaatagcaacaagagaaaggagacgggaATG     ..................................................................................................................