Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance from promoter:46 nt. Distance to gene:181 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-14.90 kcal/mol
Antiterminator: Distance from promoter:13 nt. Size=37 nt. Delta G= -8.90 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G=-10.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ATGAGT-TACAGT. It has a score value of 66.93 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGAGTTTTTTAGTACGGATTCTTACAGTTGCCAAATGCAATTGCTTATAGAGAATGA
GTGAaaacgcactttagagcatcctcaaagtatgtgaggatgcttttttagcataaaaaaggcatctagcaaaagtactagatgcaaataaaaacac
aagggaagacaaaattcttcccttttcccgtaagtaattatatcaaaaaatttataaaaaactagctttatttttaatataattgatatgtgaagctatg
aaagtataagattacactatttttgtagtgttTTG
BT9727_0979
Gene: BT9727_0979 GI: 49477076 BI number: BT9727_0979 GOG: ------- Description: hypothetical protei
A
A A
C T
CG
GC
TA
TA
GT Aa
AT G a
CG Ta
| C Gc
| T A g
| T Gc
| A Ta t
| T A | g a
A A A | a t
TG Gc a g
TA At at
CG Gt cg
TA At ta
TA Ta cg
AT A | cg
G G Tg ta
G A Ta at
CG Cg cg
AT Gc gc
TG Ta at
tttttagcataaaaaaggcatctagcaaaagtactagatgcaaataaaaacacaagggaagacaaaattcttcccttttcccgtaagtaattatatcaaaaaatttataaaaaactagctttatttttaatataattgatatgtgaagctatgaaagtataagattacactatttttgtagtgttTTG
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