Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:20 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-11.80 kcal/mol
Antiterminator: Size=68 nt. Delta G=-12.30 kcal/mol
Anti-antiterminator: Size=36 nt. Delta G= -8.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AATTGCAAAGCGTACGTTCCCAGCAGCAACATATGCAGTATTTACAACGCCGAAAGTT
CCTCATGAAGAAATGGTATCGTCTATTCACCAAACATGGAATGCAGTATTCTCAGAGT
GGTTCCCGCATTCAGGATACGAACATTGCGGCGTTAATGAGTTTGAGCTATACGATGA
GCGTTCCCATGCAGATAAAAGTGAGTTCGCTCAAATTGAACTTTGGATACCGGTGAAG
AAGAAATAAtagattgagagcgagtcattgagaaatggttcgcttttttacaaagggagagtggggatATG
BT9727_1014
Gene: BT9727_1014 GI: 49477094 BI number: BT9727_1014 GOG: NOG40651 Description: possible Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamil
CG
C G
AT
TG
A A
G A
G |
TG
TA
TA
CG
| A
| A
| A
| T
| A
A A
A t
G a
Tg
AT Ta
G A At
A A At
C A | g
G A A a
TG Cg ag
AT Ta g a
CG Cg ta
C A Gc ta
C G Cg at
T T Ta cg
T T Tg t g
GC G | g t
CG At at
GC Gc gc
AT Ta cg
GC Gt gc
TA At at
tttttacaaagggagagtggggatATG
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