Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance from promoter:42 nt. Distance to gene:108 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G= -6.30 kcal/mol
Antiterminator: Distance from promoter:31 nt. Size=16 nt. Delta G= -3.80 kcal/mol
Anti-antiterminator: Distance from promoter:3 nt. Size=31 nt. Delta G= -4.90 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgatg-taaatt. It has a score value of 68.94 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgatgaatactaaatcctgtaataaattaatcctcggttccgatttgtatattgtaccctggtttcagttgaccatttttcatgtggtcttctttcatc
cgcataaagatcgcatctgtatctgttttcgaaaaactatttcttttgataattttgttgtggtgacttaattatatcaaaaaggacgattctttttttt
gtTTG
BT9727_1025
Gene: BT9727_1025 GI: 49477100 BI number: BT9727_1025 GOG: ------- Description: S-layer protei
gt
t a
t t
ta
at
gt
cg t
c t t c
t | ag t a
ta c t t t
gc t t tg
gc tg at
c c ta cg
t t gc cg
cg gc at
cg ta gc
ttctttcatccgcataaagatcgcatctgtatctgttttcgaaaaactatttcttttgataattttgttgtggtgacttaattatatcaaaaaggacgattcttttttttgtTTG
..................................................................................................................