Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:125 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G=-13.60 kcal/mol
Antiterminator: Size=40 nt. Delta G= -9.30 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G= -5.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAGTACTGTACACACAAGCGAACCGAATTAAAGTACATTCACCAGATAAACTAATGAT
TAATTTAGACGGTGAATATGGTGGAGATGCACCGATGGAATTCGAAAATATATATCAT
TGTCTGGAACTATTTGTTCCTGAACATCAAGAGGATGCCCTGTAAaggcatcctttttattatatag
aaggattgtaaattggaagttagtttgattttcatggtatttttacaattcgtttattttatatccatactttattgatacactggaggagataagagac
gagaggtagggtgtgctATG
BT9727_0292
Gene: BT9727_0292 GI: 49479059 BI number: BT9727_0292 GOG: ------- Description: haloacid dehalogenase-like hydrolas
GA T
G A A T
T T T T
AT CG
GC AT
CG AT
C A GC
A A GC
C A | T
G | | G
TA | A
AT | A
G A | C T
A T | A G A
G A | T T A
GT | C C a
TA | A Cg
GT TA Cg
GC CG Gc
TA TA Ta
AT G G At
T T TG Gc
A G TA Gc
AT AT At
GC CG Gt
tttattatatagaaggattgtaaattggaagttagtttgattttcatggtatttttacaattcgtttattttatatccatactttattgatacactggaggagataagagacgagaggtagggtgtgctATG
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