Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:137 nt. Distance to run of Ts=0 nt. Size=39 nt. Delta G=-19.10 kcal/mol
Antiterminator: Size=34 nt. Delta G= -4.90 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G= -6.34 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGACAAACCACAGTCAAATGGAAGTTATGACGCTTCTGACAAAGAGATTGAGTCAGCG
ATTGAAGATATAATCCTGGCAAAACCGCTTTGAatcatttgtcacgatgcaagatgctctcaaagagacttagctg
ctgcagtgggcggttaagtcttctttattttaccataaaacagaacgtacattcttattttaagtattaaaatatacataatcaataaaattcagaaaat
taggtgtaaaccccttgcttaaaatgatataaaagtgatatcatttttatatcaggaggcgatcatATG
BT9727_0272
Gene: BT9727_0272 GI: 49479083 BI number: BT9727_0272 GOG: ------- Description: band 7 family protei
TT
T G
C A
G a
C t
C c
A a
At
At
At
Cg a ag
Gt a a c t
Gc cg g g
Ta ta tg
C c cg cg
Cg ta gc
Ta | c tg
At | t cg
| g | t gt
| c | a at
| a cg ta
| a gc ta
A g t t cg
Ta a g at
At g c gc
Tg a | | t
| c at at
At cg gc
Gc gc at
At ta at
tattttaccataaaacagaacgtacattcttattttaagtattaaaatatacataatcaataaaattcagaaaattaggtgtaaaccccttgcttaaaatgatataaaagtgatatcatttttatatcaggaggcgatcatATG
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