Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance from promoter:96 nt. Distance to gene:63 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-12.80 kcal/mol
Antiterminator: Distance from promoter:61 nt. Size=47 nt. Delta G= -7.20 kcal/mol
Anti-antiterminator: Distance from promoter:28 nt. Size=57 nt. Delta G=-11.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ATGAGA-TATACT. It has a score value of 62.92 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGAGAGCGTTCGTAGATTGTTCTATACTGCTTGTACGCGCGCGATGCATGAATTACA
ACTTTATAGCGTTGGCGAGGTTAGTCCTTTTATTGTTGAGGCTGATTCGGAGAGTTTT
GAACTTATTACACCTTGAtaacaatcaaggtgtttcttttttgtgcaggatttacaactttaaagtagaatatatcagtttagaaaa
aagttaaggagcgaaaagATG
BT9727_0960
Gene: BT9727_0960 GI: 49479801 BI number: BT9727_0960 GOG: ------- Description: hypothetical protei
A
T G
T T
GC
GC
AT
GT
| T
| T
| A T
| T T T
| T T G
CG G A
GT A A
GT GC
TG AT
TA GT
G G G A
CG C T
GC T T
AT T A
TG A |
| A GC ac
| T TA a a
| T C | ta
| C GC At
| G GC Gc
A G AT Ta
TA G T Ta
TG T G Cg
TA TA Cg
CG Gt At
AT Ta Cg
AT Ta At
ttcttttttgtgcaggatttacaactttaaagtagaatatatcagtttagaaaaaagttaaggagcgaaaagATG
..................................................................................................................