                                                                        Gene putatively regulated by attenuation in B_thuringiensis_konkukian

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:170 nt.     Distance to run of Ts=0 nt.   Size=40 nt.     Delta G=-18.60 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -6.11 kcal/mol
Anti-antiterminator:   Size=49 nt.     Delta G=-10.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tagaaaacgttgataaaacaccatccgtataccttatataggtattgggtatatgaaatcaggggtatattttaataacttgaaaaacaccaaatgaacc
ctttatttaaaaggtttatttggtgtttttataggtatttaaattcgggaaataattataaaaacataggggtatatttataaaaggtcaaaaatagcgg
ttttatgaaaaataggtgaggaatttaaaaaatgtgtatgttttttcagtgtgaaattgacttttagtggagttacgataataatcatgaaagaggtgat
ATG

    BT9727_0511 --- BT9727_0512 Gene: BT9727_0511     GI: 49479854     BI number: BT9727_0511     GOG: -------     Description: conserved hypothetical protein Gene: BT9727_0512     GI: 49479855     BI number: BT9727_0512     GOG: -------     Description: hypothetical protei ag t  g at ta at t  t        g tg       t  a cg       t  a       tt cg       c  a      a  t at       a  a       ta ta       a  a       ta at       t  c       ta ta       a  a      c  a gt       a  c       cg cg       t  c       cg |  a       ta        at |  a       ta        at |  a       ta        gt |  t       at        ta c  c       tg        at t  a      a  a       at a  g       ta        at cg        gc        cg cg        gc        cg a  |       gc        at cg        gt        cg at        at        at                         ttttataggtatttaaattcgggaaataattataaaaacataggggtatatttataaaaggtcaaaaatagcggttttatgaaaaataggtgaggaatttaaaaaatgtgtatgttttttcagtgtgaaattgacttttagtggagttacgataataatcatgaaagaggtgatATG     ..................................................................................................................