Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:193 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-19.90 kcal/mol
Antiterminator: Size=56 nt. Delta G= -5.29 kcal/mol
Anti-antiterminator: Size=30 nt. Delta G= -3.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ACATGAAACAGAAGATGAAAAATATATGTATAGCTGGATTGAAGAGGGATCATATACT
GTGAAATAAataaaaagaggcatgctcaataacggagcatgcctcttttatggaatcgacatgtataataataccaaaaaaagttatagaaaga
tatatagaaaggatgatcaagataatgcgtattcataagaatttctacttatttcgacaaagattaatgtggtaatttttagtttgaaaatttgtatttt
tctgattctatatataatataattgttggggaactaaggggggaatttATG
BT9727_0216
Gene: BT9727_0216 GI: 49480097 BI number: BT9727_0216 GOG: ------- Description: permease; probable multidrug resistance protei
A
T C
A T
TG
AT
CG
TA
A A
G A
G T
G A
A A
G G a
A A A t
A G A a a
G G G a t a
TG T a a c
TA T a a g
AT A a cg
GC G g ta
G A G a cg
T | Tg gc
C | Cg ta
G | Gc at
AT A | cg
TA Ta gc
AT At gc
TA Tg at
GC Gc gc
ttttatggaatcgacatgtataataataccaaaaaaagttatagaaagatatatagaaaggatgatcaagataatgcgtattcataagaatttctacttatttcgacaaagattaatgtggtaatttttagtttgaaaatttgtatttttctgattctatatataatataattgttggggaactaaggggggaatttATG
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