Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:59 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-22.70 kcal/mol
Antiterminator: Size=52 nt. Delta G= -5.83 kcal/mol
Anti-antiterminator: Size=69 nt. Delta G=-15.93 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GAAGTTCGCGGTAAAGGTTTATTCATCGGTATCGAATTAAACGAGCCAGCTCGTCCTT
ACTGTGAACAACTAAAAGCAGCTGGTCTATTATGTAAAGAAACACACGAAAATGTAAT
TCGTATCGCACCACCACTAGTAATCTCTGAAGAAGATTTAGAGTGGGCGTTCCAAAAA
ATTAAAGCGGTATTATCGTAAtaatagagagtctgtcctacacgttaggacagactctttctttttttagtagtttatcgtaaaa
taaattttaatattcggtctttttacgaaaggggtagttatATG
BT9727_1051
Gene: BT9727_1051 GI: 49480825 BI number: BT9727_1051 GOG: ------- Description: hypothetical protei
GA
T A
CG
TA
| A
CG
TA
AT
AT
T T
G A
A G
TA
CG
AT
CG T
CG A T
A G TA
C C GT
CG GC
AT CG
| T GT
| C A A
| C A A
| A At c
| A Ta a g
| A Ta c t
| A At at
| A A a ta
| A A g cg
| T A a cg
| T A g ta
| A A a gc
| A C g ta
| A C t cg
CG T c ta
GC T | gc
CG Gt at
TG Cg gc
AT Gt at
TA Gc gt
GT Gc at
ctttttttagtagtttatcgtaaaataaattttaatattcggtctttttacgaaaggggtagttatATG
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