                                                                        Gene putatively regulated by attenuation in B_thuringiensis_konkukian

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:189 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-23.20 kcal/mol
Antiterminator: Size=75 nt.     Delta G= -7.82 kcal/mol
Anti-antiterminator:   Size=53 nt.     Delta G= -7.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCAATTGATACAGTGAGAAGTACGAAGGAATTTATTAAAGAGTAAaagtagaggtaataagtaggag
agcaagtagttttagctgatagctggaactgcttgcttttttatttatctcattaagttttctgacaaatgtttctcaagttatcgaaaaggaaaacttt
ggtataatttgtttaaatatttaattttctgataattatttttcaatacatagaaaagaggtgatactatacaattttgataattgtataaatatcctaa
ttttgtaagcttaagaaaaggggatgcgagtgtATG

    BT9727_0937 --- BT9727_0938 Gene: BT9727_0937     GI: 49481528     BI number: BT9727_0937     GOG: -------     Description: possible response regulator aspartate phosphatase Gene: BT9727_0938     GI: 49477055     BI number: BT9727_0938     GOG: -------     Description: hypothetical protei             a           A  a           A  g           T  t           G  a           A  g           G  a           A  g tg       A  g g  t       At a  A       Ta gT        Ta cG        At gC        Ta tA        Ta a  G       Tg g  |       At g  |      |  a g  |      |  g g  |      |  g a  |      |  a a  |      A  g        a a  |      G  a      g  t a  |      G  g      t  a g  |      A  c       cg a  |      A  a       gc aT       G  a       at tG        Cg        tg tA        At        tg cG        Ta        ta |  A      G  g       ta g  A       At        gc a  G       At        at aT        Gt        tg tA        At        gc gC       G  a       at tG        Tg        at tA        Gc        cg tA        At        gc tG        Cg        at                         tttttatttatctcattaagttttctgacaaatgtttctcaagttatcgaaaaggaaaactttggtataatttgtttaaatatttaattttctgataattatttttcaatacatagaaaagaggtgatactatacaattttgataattgtataaatatcctaattttgtaagcttaagaaaaggggatgcgagtgtATG     ..................................................................................................................