Gene putatively regulated by attenuation in B_thuringiensis_konkukian
Characteristics of the secondary structures
Terminator: Distance to gene:214 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-17.90 kcal/mol
Antiterminator: Size=39 nt. Delta G= -4.50 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G= -3.01 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TACTTCGGTAATATTACAACAGAAGATTTCTTACATTTATTCTTCTAAaaataagagaggctgc
cgtaacgagcagcctctttttttgcgtaaattgtcgcgttttgtcggtaagttgatatatttaaaaaatcgctgatatattccgagttacgaccgatata
tttggaaaatcgctgatatatttcgagttgcgctgatatatctgaaaaatcgccgatataattttatatacgataaaatcacaggacatctgcctcttat
aaaggaatatacatattcaaaaggaggcggatcaaaATG
BT9727_1002
Gene: BT9727_1002 GI: 49481719 BI number: BT9727_1002 GOG: ------- Description: possible lipoprotei
A
a T
a G
a A
cG
tA
aT
gT
g |
c |
gT
gC
aT
gT
g A CT
a C T T
a A T C
a T AT
a T TA
c | TA a
t | Ta t a
t | A a gc
a | C a cg
t | At | a
a | Ta cg
c | Ta gc
a | Cg ta
t | Ta cg
aT Tg gc
tA Ta gc
aT | g at
aT A g gc
gC Gc at
gT At gt
tttttgcgtaaattgtcgcgttttgtcggtaagttgatatatttaaaaaatcgctgatatattccgagttacgaccgatatatttggaaaatcgctgatatatttcgagttgcgctgatatatctgaaaaatcgccgatataattttatatacgataaaatcacaggacatctgcctcttataaaggaatatacatattcaaaaggaggcggatcaaaATG
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