Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance to gene:13 nt. Distance to run of Ts=0 nt. Size=39 nt. Delta G=-14.10 kcal/mol
Antiterminator: Size=63 nt. Delta G= -5.12 kcal/mol
Anti-antiterminator: Size=36 nt. Delta G= -5.07 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTTACCGCTGACTTCTACACAGATAACGGTAGTGAAAATTACAATGTTACTAAAGAAG
GCAATCAATACATTCTTTCAAGCGAAAGCTCATCTGGTATCAACATAACTGTTACAGG
TAAAGCAATGACTATAAGTTTCCTTAATAATGCAGGAAGTATGACCACTTTTACCGGA
ACTCGTGATTAAagcccaccaatctttacagtaaaagtagaaattcagtaaaggttacaaatatcccaaagccgtaatttcccttttcttg
aaaatgagaaattacggcttttataaataaaagctATG
BT0171
Gene: BT0171 GI: 29345581 BI number: BT0171 GOG: ------- Description: conserved hypothetical protei
a
t t
a c
a c
a c
c a
a a
ta
tg
gc
gc
a g
a t
a |
t |
g | tt
a | c g
ta c | ta
g g ta ta
a a ta ta
a a at ta
a a at | t
a t at c g
t t gc c a
g c a c cg
a a t | ta
cg gc ta
at at ta
ta at at
ta at at
ta at ta
cg t c gc
tg gt cg
at at cg
at cg gc
ttttataaataaaagctATG
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