                                                                        Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:96 nt.     Distance to run of Ts=2 nt.   Size=26 nt.     Delta G= -7.70 kcal/mol
Antiterminator: Size=49 nt.     Delta G= -8.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGGTCTGCACACCGAACGCGGCCGGGAGGAAATCTGTATCGGTAATCCTGAGCATGT
TCAACAACCTCTTATTCAGGCAGTAGTAGATCATCTGCTCGGTAAGTCAGTCTGCTCA
TGCGACGGAGAAAGTGCTACCTTGACTAACTGGGTAATGGACAAAATATTAGGGAAGC
TCTAAgataatgctccctcgtttgtttcttaaaataatttaatcactttattctatcgttagttttctttatatttgcgaaaggtagcaataaaagc
aaaactaacgatatttattttttataactATG

    BT0321 --- BT0320 Gene: BT0321     GI: 29345731     BI number: BT0321     GOG: COG0590     Description: cytidine/deoxycytidylate deaminase Gene: BT0320     GI: 29345730     BI number: BT0320     GOG: -------     Description: hypothetical protei   A A  T T  G G  G G  A GC TA C  A A  A A  A T  T C  A        g AT       A  a GT       A  t TA       T  a TG       C  a CG       T  t CG        Cg A  A       Gc TA       A  | CG        At GC        Gc T  T       Gc GC        Gc AT        At             cgtttgtttcttaaaataatttaatcactttattctatcgttagttttctttatatttgcgaaaggtagcaataaaagcaaaactaacgatatttattttttataactATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [FJ] COG0590 Cytosine/adenosine deaminases ... can be seen here     ..................................................................................................................