Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance to gene:189 nt. Distance to run of Ts=2 nt. Size=30 nt. Delta G=-10.20 kcal/mol
Antiterminator: Size=45 nt. Delta G= -5.90 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-12.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCATAGATTTCGTAGTCTGTGCATCCTATTGCTTCTTCCCGCTTAATGCCGGATTGCA
GTTCGGATTCTTTGTTCCAGTAATAGTATCGGAAACTATTCTGGATATCTTTTACCAT
AATAGGGAAAGGGAGGTTATCGAGTATATCGAATAAAGAATGATAGTAATCCTGTTCT
TTTCCTATATTCTTTTTAAGTTGTCGTAGTCTGTATAATAAAAAGCAGATGATCAGGA
GTAAAAAGCCTATTAGTAAATAATAATAACTCCAATGCTGGTCTGTAATCCATATAAC
GGATAGTATATTG
BT0538
Gene: BT0538 GI: 29345948 BI number: BT0538 GOG: ------- Description: hypothetical protei
TT
C C GA
T C G T
T C C T
CG T C
GC T T
T T GT
T T AT
A A CG
T | GT G
C | T | C G
C | T | T A
TA AT A A
AT GC TA
CG GC GC
GC C A AT
T | CG TA
GC GT AT
TG TA AT
CG A A T |
TA A T GC
GT T | AT
AT TA CG
TG CG CG
GC GT TA
TATCTTTTACCATAATAGGGAAAGGGAGGTTATCGAGTATATCGAATAAAGAATGATAGTAATCCTGTTCTTTTCCTATATTCTTTTTAAGTTGTCGTAGTCTGTATAATAAAAAGCAGATGATCAGGAGTAAAAAGCCTATTAGTAAATAATAATAACTCCAATGCTGGTCTGTAATCCATATAACGGATAGTATATTG
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