                                                                        Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:174 nt.     Distance to run of Ts=1 nt.   Size=23 nt.     Delta G=-10.20 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -4.82 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G= -7.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGCTGGCAATGGCATTCATGGGCTTCTCTGGCGTCGTGTAAaagactaagttgataattagataaaga
ggctggaaactctgtcgtatggcaacatacaggcagtttgtttccggcctttttctttatatctgttcataccgaatatgttttttatcataccaaaacg
ccctcaaatcgtcccgtaagtatcttcctgtgaataaaattgcgatagtttattgcatttccattttatttccatacatttgtacctcaaacaaactgaa
aaccgaaaaactaaccatattttaaaattatATG

    BT0623 Gene: BT0623     GI: 29346033     BI number: BT0623     GOG: COG1087     Description: putative UDP-glucose 4-epimeras ag a  a A  c At Ta |  a G  g       gg T  t      t  a Gt       c  a Cg       g  a Ta        gc Gt        at |  a       gc C  a       at Gt       a  | Gt       a  | Ta        tg Cg        at        ca Ta        gc       g  a |  t      a  g       gc |  a      t  t       ta |  a      t  a       at |  a      a  t       ta Cg       a  g       gc Ta       t  g      |  a Tg       a  |       cg Cg        gc        tg Gc        ta        gc Gt        ta        ta                         gtttgtttccggcctttttctttatatctgttcataccgaatatgttttttatcataccaaaacgccctcaaatcgtcccgtaagtatcttcctgtgaataaaattgcgatagtttattgcatttccattttatttccatacatttgtacctcaaacaaactgaaaaccgaaaaactaaccatattttaaaattatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG1087 UDP-glucose 4-epimerase ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:190 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-12.80 kcal/mol Antiterminator: Size=43 nt.     Delta G= -4.82 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case TTGCTGGCAATGGCATTCATGGGCTTCTCTGGCGTCGTGTAAaagactaagttgataattagataaaga ggctggaaactctgtcgtatggcaacatacaggcagtttgtttccggcctttttctttatatctgttcataccgaatatgttttttatcataccaaaacg ccctcaaatcgtcccgtaagtatcttcctgtgaataaaattgcgatagtttattgcatttccattttatttccatacatttgtacctcaaacaaactgaa aaccgaaaaactaaccatattttaaaattatATG     BT0623 Gene: BT0623     GI: 29346033     BI number: BT0623     GOG: COG1087     Description: putative UDP-glucose 4-epimeras ag a  a a  g t  g ac gt ag tg t  | a  | aa        ca ta       g  a aa        gc g  c       ta t  t       at t  c       ta g  t       gc a  g      |  a a  t       cg t  |       tg cc        gc ag        ta gt        cg             tttgtttccggcctttttctttatatctgttcataccgaatatgttttttatcataccaaaacgccctcaaatcgtcccgtaagtatcttcctgtgaataaaattgcgatagtttattgcatttccattttatttccatacatttgtacctcaaacaaactgaaaaccgaaaaactaaccatattttaaaattatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG1087 UDP-glucose 4-epimerase ... can be seen here     ..................................................................................................................