Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance to gene:51 nt. Distance to run of Ts=2 nt. Size=36 nt. Delta G= -9.10 kcal/mol
Antiterminator: Size=37 nt. Delta G= -5.00 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G=-25.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGTGGTGACGTAAGCCGTAAACGTAAACTGCTTGAAAAGCAGAAAAAGGGTAAAAAAC
GAATGAAACAAATCGGTAATGTGGAAGTGCCGCAGAAAGCCTTCCTCGCCGTACTGAA
GCTGGATTAAaaaatgaaccgcaagcgatttttcagagagttattctgaacaaatcggcttgcggttagttttttaatacaccaggtgattgt
cttctgtctgcagagctttccttggcaatcaccttttttgaaacaaacaactataaatatgagaaaagttctgtctttttcgggcttcctgATG
BT0633
Gene: BT0633 GI: 29346043 BI number: BT0633 GOG: NOG40295 Description: putative Na+/H+ exchange protei
t
g t
a a
gt
at
gc ct
at t g
cg tt gc
ta t t ta
ta gt cg
| c at ta
ta ta tg
ta ta | c
ta gt | t
at | a | t
gc | c | t
| g g a | c
cg c c | c
gc gc | t
at ta | t
at tg cg
cg cg tg
gc g | gc
cg gt ta
cg cg ta
at ta at
at at gc
accttttttgaaacaaacaactataaatatgagaaaagttctgtctttttcgggcttcctgATG
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