                                                                        Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:150 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-13.70 kcal/mol
Antiterminator: Size=53 nt.     Delta G= -9.40 kcal/mol
Anti-antiterminator:   Size=35 nt.     Delta G= -8.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TAAGTTCGGAGTGCTATCGGGGACTATTCTTTCCGGATTATTAGGATACATTGTACTC
AGGATAGTATTACCTGTCCGAAAGCGGAAATAAtaactagagatcagtcgttcaggcatatcggatattcatcagg
cgatatgccttttttattgtatatataatataaggtgaaaatgatatctactaataatattagttaaacaactgctttatttagtagattaactaatagt
gttagttgtttgtttgaaaaatagtattatatttgtgccattggaagaacaataaatatgtagactATG

    BT0635 Gene: BT0635     GI: 29346045     BI number: BT0635     GOG: COG3682     Description: putative transcriptional regulato             g           a  a           g  t           a  c            ta            cg            at           a  c           t  g           A  |           A  |           T  | TT       A  |       tt A  A       At       a  c T  C       At        ta GC        Gc        at AT       |  a       gc TG       G  g      |  a AT        Cg       |  g GC        Gc       |  g GC       |  a       gc A  |      A  t       cg CG       A  a       ta TA        At        at C  A       Gc        ta A  A       Cg        at TG        Cg        cg GC        Ta        gc TG        Gt        gc TG        Ta        at                         tttttattgtatatataatataaggtgaaaatgatatctactaataatattagttaaacaactgctttatttagtagattaactaatagtgttagttgtttgtttgaaaaatagtattatatttgtgccattggaagaacaataaatatgtagactATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG3682 Predicted transcriptional regulator ... can be seen here     ..................................................................................................................