Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance to gene:177 nt. Distance to run of Ts=0 nt. Size=37 nt. Delta G=-25.90 kcal/mol
Antiterminator: Size=63 nt. Delta G=-13.27 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATCGCAAGATTAGCAGCGGCGCAGGCAGCAATTGAAGGATAGaaagataaactggttagaaagttaact
ttctgataattgggctgtaatcgtctcgtgagagaatgattacagccttttttgttggatgatgttatttttaattgtatttgttcagccctgataatca
gccattaataatgatttgtttggtgattattataaaaaactaactaaatatttgtttaagatgaagaagtagcttaattttgcccccgaaaacaaaacat
gtttttattttataacttaaaaagaaagaagATG
BT0645
Gene: BT0645 GI: 29346055 BI number: BT0645 GOG: ------- Description: conserved hypothetical protei
ta
t g
g a
g a
ta
cg
at
at
a a
t a
a |
gc
at
at
at tg
Gc g a
At cg
Tg ta
A a cg
G t | a
G a ta
A a gt
A t cg
G t ta
T g at
T g at
A | ta
A | gc
Cg ta
Gc cg
At gc
Cg gc
Gt gt
tttttgttggatgatgttatttttaattgtatttgttcagccctgataatcagccattaataatgatttgtttggtgattattataaaaaactaactaaatatttgtttaagatgaagaagtagcttaattttgcccccgaaaacaaaacatgtttttattttataacttaaaaagaaagaagATG
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