Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:181 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G= -6.20 kcal/mol
Antiterminator: Size=35 nt.     Delta G= -8.80 kcal/mol
Anti-antiterminator:   Size=24 nt.     Delta G= -7.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

Ttcttttaaatggtattgccatgatgataaattaaagatttagaaaaatataaattaataattactgattgctgtcactcgatcagtgtcgggagagaga
atgagctctgtttctttctttcgatgtgtcaaaggtagcctattattaagccatgagaatacgtactttatcgtacttcgtcgtactttctttcagaatg
tatttactttctttctgattgattttattttacttgtttgcttgtgtgcgcaaatatgttttagtatatttgaagtacgaaagaacttaaaaacaacgat
ATG

    BT0708


Gene: BT0708     GI: 29346118     BI number: BT0708     GOG: -------     Description: hypothetical protei


           ag
          c  t
           tg
           at
           gc
           cg
 tc        tg        tg
g  a       cg       a  a
t  c      a  a      a  g
c  t       cg        gc
 gc        ta        at
 tg       g  g       gc
 ta        ta        at
 at        cg       g  g
 gc       g  |       at
 ta        ta        gt
 cg        ta        gt
 at        at        gc
                        tttctttcgatgtgtcaaaggtagcctattattaagccatgagaatacgtactttatcgtacttcgtcgtactttctttcagaatgtatttactttctttctgattgattttattttacttgtttgcttgtgtgcgcaaatatgttttagtatatttgaagtacgaaagaacttaaaaacaacgatATG
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