                                                                        Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:120 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-15.80 kcal/mol
Antiterminator: Size=73 nt.     Delta G= -9.71 kcal/mol
Anti-antiterminator:   Size=43 nt.     Delta G= -7.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCTTTGCTTTTATTGAAATGCCGGATGATACAGAAGCAGCTAACGCTATCAAAGAATT
GAATGGTGCTGAATATGTAGGCCGTCCGATGGTAGTTAAAGAGGCTTTGCCGAAGAAC
TAAttgactgaataacaatcagtatataaaaagaaggtgtgttggtgatcccaacacaccttctttcgtttctgcagaatcctggccggactatttct
taaagtccaaagaatttatctctctttttattgtctgcggttatttttttcttacctttggttcactaacaacaaaccgatagaagATG

    BT0785 Gene: BT0785     GI: 29346195     BI number: BT0785     GOG: COG0174     Description: glutamine synthetase             a           a  c           t  a           a  a            at            gc            ta            cg            at           g  a           t  t           t  a           A  t           A  a           T  a   T       C  a T  T      A  a CG       A  a GC       G  g GC       A  a A  G      A  a G  A      G  | A  A       Cg A  G       Cg A  |       Gt TA       T  | TA       T  |        a GC       T  |      g  t AT        Cg       t  c TA        Gt        gc G  A      G  g       gc G  t       At        ta T  t       Gt        ta A  |      A  g       gc G  |      A  g       ta C  |       At        gc Cg        Tg        ta Ta        Ta        gc Gc        Gt        gc                         ttctttcgtttctgcagaatcctggccggactatttcttaaagtccaaagaatttatctctctttttattgtctgcggttatttttttcttacctttggttcactaacaacaaaccgatagaagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0174 Glutamine synthetase ... can be seen here     ..................................................................................................................