Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance from promoter:91 nt. Distance to gene:20 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -6.00 kcal/mol
Antiterminator: Distance from promoter:35 nt. Size=63 nt. Delta G= -6.16 kcal/mol
Anti-antiterminator: Distance from promoter:9 nt. Size=31 nt. Delta G= -7.10 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGTTG-TATACT. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGTTGAAGTTAGTCAACAGAATATACTCTCCAAAATCTTCCAGGTTACGTTTTGTGT
AACGGGGCAGCCAATTAGCTACGATTTCTTCTTTCGTTTTCATaattatctattaaatttgtggttcc
aataatggaaaccgttatttaacttacaaaaataataaATG
BT0887
Gene: BT0887 GI: 29346297 BI number: BT0887 GOG: NOG41868 Description: conserved hypothetical protei
T
C T
T C
T T
T T
AT
GC
CG
AT
| T
| T
T T
C C
G A
AT
Ta
Ta
At
| t
| a
| t
| c
| t
| a
| t
T | t
T T | a
T G | a
GT | a
CG | t
AT | t ta
TA | t a a
TA | g at
GC At cg
G G Cg cg
A G Cg | a
CG Gt ta
CG At ta
T C C | gc
TA Gc gc
CG Gc tg
ttatttaacttacaaaaataataaATG
..................................................................................................................