Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance to gene:196 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G= -9.60 kcal/mol
Antiterminator: Size=78 nt. Delta G= -6.86 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gattttatggtatttatctgatacataaaatatcaagaaaatgagttaaaagaactcttgtaaaaatataaaaacagatagtcattgtctgactacctgt
tttttcagTGGAGCGGTAAGCGAGACTCGAACTCGTGACCCTTAGCTTGGGAAGCTAGTGC
TCTCTAAAGCCTTCAAAGCCTTCGGCttcgcaggcaaccaactgagctataatcgcttataatagttatctttaataacag
atttccttatagaatctatggttgaactcttggttgaacttctaagttaaatccaagaATG
BT0930
Gene: BT0930 GI: 29346340 BI number: BT0930 GOG: ------- Description: hypothetical protei
t
t a
g a
a a
g a
t g
a a
a a
a c
at
gc
at
at
cg
| t
t a
a a
t a
a a
a a
a t
a a
t t
a a
c a
a a
t a g
a a t t
gc t c
ta at
cg cg
ta ta
at gc
ta at
tg ta
t t a c
a c gc
ta at
gt cg
gt at
tttttcagTGGAGCGGTAAGCGAGACTCGAACTCGTGACCCTTAGCTTGGGAAGCTAGTGCTCTCTAAAGCCTTCAAAGCCTTCGGCttcgcaggcaaccaactgagctataatcgcttataatagttatctttaataacagatttccttatagaatctatggttgaactcttggttgaacttctaagttaaatccaagaATG
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