Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance to gene:159 nt. Distance to run of Ts=0 nt. Size=18 nt. Delta G= -6.30 kcal/mol
Antiterminator: Size=48 nt. Delta G= -7.63 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
cagtgatatatgacgtcaatttaactaatggctctccattactaatactagctttgacattagcttccattcgtttccatatatcttctagttcctgcca
ctcttcttctggaaggtcttccggttttattactggatattttacttcatcattcattgtcataattgttaatagtagccgcagtaggaactccaactgc
tgtaccaaatccatacttgttaaatcttctcataaattcattcttatccttattaattactatatttgcagtattgtttaactttaaatactcaatagat
ATG
BT0938
Gene: BT0938 GI: 29346348 BI number: BT0938 GOG: ------- Description: hypothetical protei
a
c c
c t
g c
t t
c t
c c
t t
t t
gc
at
tg
cg
ta
ta
cg
tg ta
at t t
| c t t
t t ta
a t gc
t c gt
a c cg
cg cg
cg ta
tattttacttcatcattcattgtcataattgttaatagtagccgcagtaggaactccaactgctgtaccaaatccatacttgttaaatcttctcataaattcattcttatccttattaattactatatttgcagtattgtttaactttaaatactcaatagatATG
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