                                                                        Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:167 nt.     Distance to run of Ts=2 nt.   Size=24 nt.     Delta G= -7.10 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -3.90 kcal/mol
Anti-antiterminator:   Size=46 nt.     Delta G= -6.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATGGGAGCAAGTATGGCTGATATCCGACCCGAATATATTACTTTATGGATTCAGGCAG
TTATCTATTTTATATTAAGTGCATGGGTATATAAAAAGAAACTCAGCTGAaagtagtatttta
gttgcatattttaaactgatatcgctcaaaagtataatatttcaaccaacgaataattaactatggaaataaaaaagttttgttgaacattttacttgat
tatctcgtccttttttatttattttgttaactattatttggagatagaccatagtactactttaaatacaactatttatATG

    BT0958 Gene: BT0958     GI: 29346368     BI number: BT0958     GOG: COG0642,COG0784,COG3292     Description: two-component system sensor histidine kinase/response regulator, hybrid ('one component system' TT T  T       AA A  A      A  A T  T      T  A C  A      A  G T  T      T  A AT       A  A TA        TA TA        GC G  G       GT AT        GC CG        TA        ag GC       A  |      t  t G  A       CG       g  a AT        GC        at CG       T  T       at TG       G  G       At TG       A  A       Gt AT       A  a       Ta G  A       Ta        Cg GT        Tg        Gt TA        At        At AT        Ta        Cg                         catattttaaactgatatcgctcaaaagtataatatttcaaccaacgaataattaactatggaaataaaaaagttttgttgaacattttacttgattatctcgtccttttttatttattttgttaactattatttggagatagaccatagtactactttaaatacaactatttatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG0642 Signal transduction histidine kinase ... can be seen here [T] COG0784 FOG: CheY-like receiver ... can be seen here [T] COG3292 Predicted periplasmic ligand-binding sensor domain ... can be seen here     ..................................................................................................................