                                                                        Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:83 nt.     Distance to run of Ts=1 nt.   Size=29 nt.     Delta G=-12.00 kcal/mol
Antiterminator: Size=35 nt.     Delta G= -8.20 kcal/mol
Anti-antiterminator:   Size=37 nt.     Delta G=-17.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gatatatacaatttttatttgttacaaagatacggctaatcttcttaataaacagcccgtcatcgcttgatctttgtcaaaaaaaacatgagggcaatct
gcgatatgcataataataggagcataaataatatagttacactatcctgccgtgatggtgtaactatgatcacagtatagtgtcactatgagaggaggat
agtgacaccattttttgtatggtttatagaggtgtatgtatcatattattttttatatttgcaaatccaatcgtttgtatacaaagataaaagcagagtt
ATG

    BT0969 Gene: BT0969     GI: 29346379     BI number: BT0969     GOG: -------     Description: hypothetical protei   c g  c        a t  g      c  c c  t      t  a cg       a  g        g ta        gt       a  g at        ta       g  a tg        at       a  g cg        ta       g  g at        cg        ta cg        at        at at       a  g       ta ta       t  t       cg ta        gc        at gc        ta        cg at        gc        ta ta        gt        gc at        ta        ta tg        at        gc                         cattttttgtatggtttatagaggtgtatgtatcatattattttttatatttgcaaatccaatcgtttgtatacaaagataaaagcagagttATG     ..................................................................................................................