                                                                        Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:187 nt.     Distance to run of Ts=3 nt.   Size=35 nt.     Delta G=-21.80 kcal/mol

                                                                        Nomenclature/Definitions

TGGAGTATACAAATTAAAGGTACCGGATAAGAAAGAAGGTATTTATTGGTTCCATAAA
CTCTGAaacaaaaaatcccgctgatgactgatcagcgggatttttccattttataggtaatttctaacaaaagagtgttataaaacatgatactta
ttttttcaacctacaaaccagattttaccggtggttgaggtcagttctgcttagctttgcaacatcaaatcaatcgaattaatgctatgatggaacagac
taataattcaaccgacactttactcgcttcttttcaagcgggaaatATG

    BT0978 Gene: BT0978     GI: 29346388     BI number: BT0978     GOG: COG1595     Description: ECF-type sigma facto            c          a  t          g  g           ta           at           gc           ta           cg           gc           cg           cg           cg           ta           at           at           at           at           at             ccattttataggtaatttctaacaaaagagtgttataaaacatgatacttattttttcaacctacaaaccagattttaccggtggttgaggtcagttctgcttagctttgcaacatcaaatcaatcgaattaatgctatgatggaacagactaataattcaaccgacactttactcgcttcttttcaagcgggaaatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:198 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-17.10 kcal/mol                                                                         Nomenclature/Definitions TGGAGTATACAAATTAAAGGTACCGGATAAGAAAGAAGGTATTTATTGGTTCCATAAA CTCTGAaacaaaaaatcccgctgatgactgatcagcgggatttttccattttataggtaatttctaacaaaagagtgttataaaacatgatactta ttttttcaacctacaaaccagattttaccggtggttgaggtcagttctgcttagctttgcaacatcaaatcaatcgaattaatgctatgatggaacagac taataattcaaccgacactttactcgcttcttttcaagcgggaaatATG     BT0978 Gene: BT0978     GI: 29346388     BI number: BT0978     GOG: COG1595     Description: ECF-type sigma facto            c          a  t          g  g           ta           at           gc           ta           cg           gc           cg           cg           cg           ta             tttttccattttataggtaatttctaacaaaagagtgttataaaacatgatacttattttttcaacctacaaaccagattttaccggtggttgaggtcagttctgcttagctttgcaacatcaaatcaatcgaattaatgctatgatggaacagactaataattcaaccgacactttactcgcttcttttcaagcgggaaatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog ... can be seen here     ..................................................................................................................