Gene putatively regulated by attenuation in B_thetaiotaomicron_VPI-5482
Characteristics of the secondary structures
Terminator: Distance to gene:189 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G=-14.90 kcal/mol
Antiterminator: Size=59 nt. Delta G=-13.30 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G= -7.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aaggattggtaaccaatgagatactataaaaagaagtggaattctttcccattattaaatggttagtttgtttgatggaggaaaagggtggctcggagag
tcgccctttttatcgtctctaaattttgattctgacgaatcttccaatctatttgagtacaaatccggcttttcatcgtctctgtataaaggatattagt
atagtgtaaaagaatcatagaaatgggaaagttaagaaatacattagctgcaataagcatcctgcttttagcttcttgtggagggaataaagattattat
ATG
BT1021 --- BT1020
Gene: BT1021 GI: 29346431 BI number: BT1021 GOG: ------- Description: arabinosidase
Gene: BT1020 GI: 29346430 BI number: BT1020 GOG: NOG26039 Description: conserved hypothetical protei
a
t g
gg t t
t a gt
g a gt
at tg
at at
gc at
at at
at tg
at ta
a c at
a c tg
t c tg
a a a a
t t cg
c | cg
at c a
ta ta
at ta g
gt ta g a
a a cg cg
g a tg ta
t a tg cg
a | at gt
at a g gc
cg g | tg
cg g | gc
at tg gc
at gc gc
ta at at
ttttatcgtctctaaattttgattctgacgaatcttccaatctatttgagtacaaatccggcttttcatcgtctctgtataaaggatattagtatagtgtaaaagaatcatagaaatgggaaagttaagaaatacattagctgcaataagcatcctgcttttagcttcttgtggagggaataaagattattatATG
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