Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:38 nt. Distance to run of Ts=2 nt. Size=34 nt. Delta G=-10.00 kcal/mol
Antiterminator: Size=48 nt. Delta G=-10.40 kcal/mol
Anti-antiterminator: Size=37 nt. Delta G= -4.22 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tatgtctggtttatcgcattaccccattgctgaaaataatgtatcttgactacaacgatcagatacaaggcttttacataagctcgtaattgtgaactca
atcatccattatcaaaagcaccttagagtaaaaagatgagaattttaaaaagcgctatagacaaataccttctttatgtgatataggcctatacgttgtg
cgtaaggtatacgtgtgatacgtttccttttagatctatttttaaaaggaactggattctttcctattatttgtgacactaaaataaagcaggataaata
GTG
rpsU
Gene: rpsU GI: 49474950 BI number: BH01320 GOG: ------- Description: 30S ribosomal protein s2
g
t t
t g
gc
cg
at
ta
t a |
c t ta
c c cg
a t cg ta
t t gt c t
a t | a t t
a a | t at
at | a gt
cg | c at
at g g ta
| g at ta
g a tg ta
at at ta
ta tg cg
at a a cg
ta gt ta
cg ta ta
g | gc t c
cg tg gt
gc at cg
gattctttcctattatttgtgacactaaaataaagcaggataaataGTG
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