                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:200 nt.     Distance to run of Ts=1 nt.   Size=28 nt.     Delta G= -8.40 kcal/mol
Antiterminator: Size=32 nt.     Delta G= -8.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTGAAATTAAAATTAATCCGCCTCCAGATGGTCATAAAGCAGAATTTGATCAGTGGAA
ATGGGTCGATCTGGAAACTCTCCCTTCGATCGTTATTTCTTTTAAAAAGCATGTTTAT
ATGAAAATTGTTAACGAATTTCGAGGTAGCTTTAAAGGATTATAAaggctatacacttatggaaagc
ttttttagtaagatgctttatattatgcgtaaagatacattctattattaatattatgcataacgttcaagaaataataaacgtaattttcttttattta
aagaactggaatataaaATG

    invB Gene: invB     GI: 49474979     BI number: BH01650     GOG: COG5342     Description: Invasion-associated protein GA G  A TA         C GT       A  T A  G      A  C CG        AT TG        GC AT        GC GC       T  C TG       C  T TA       T  | T  |       AT A  |       GC AT        CG GC        TA AT        GT CG        GC             GTTATTTCTTTTAAAAAGCATGTTTATATGAAAATTGTTAACGAATTTCGAGGTAGCTTTAAAGGATTATAAaggctatacacttatggaaagcttttttagtaagatgctttatattatgcgtaaagatacattctattattaatattatgcataacgttcaagaaataataaacgtaattttcttttatttaaagaactggaatataaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG5342 Invasion protein B, involved in pathogenesis ... can be seen here     ..................................................................................................................