                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:80 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-16.50 kcal/mol
Antiterminator: Size=41 nt.     Delta G= -6.50 kcal/mol
Anti-antiterminator:   Size=36 nt.     Delta G= -5.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gggagagcatctttagtattttttgtggcactattatcacagttcccatgttattgtgcaggcagaatatcatgaagcttaatttttttaagaaaatttt
gcaaaagataaacaggagtttagctttaagatcaatgatttatgcatgtgtataacttgcaagttttcgtataaaacgaaatgactaagaggttccgttt
gtaacggggcctctatttttataactgtggtatttttactacagattttctttgcgtaagtgtttaccattacagcataaataaattaggagcaaaattt
ATG

    hbpA Gene: hbpA     GI: 49475067     BI number: BH02560     GOG: -------     Description: Hemin binding protein             a           t  a           a  a   a        ta t  t       gc g  a       cg ta        ta gc        ta t  t      |  a        g at       |  t      t  t cg        tg        ta gc        ta        ta ta        gc        gc |  a       at        cg a  g      a  a       cg t  t      c  a       tg t  t      g  g       tg t  t       ta        gc at        tg        gc gc        cg        at tg        at        gc at        at        at                         atttttataactgtggtatttttactacagattttctttgcgtaagtgtttaccattacagcataaataaattaggagcaaaatttATG     ..................................................................................................................