                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:194 nt.     Distance to run of Ts=1 nt.   Size=29 nt.     Delta G= -8.40 kcal/mol
Antiterminator: Size=42 nt.     Delta G= -5.30 kcal/mol
Anti-antiterminator:   Size=36 nt.     Delta G= -6.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCTTCTCTTGCCTATCGTATTGTTCTTGTTGCACAAGGTGAGATCGATATTGTGTTAA
TTCGTCCGAATTGTCATGCGTGGGATATTGCCGCTGCTGATCTTATTTTGCAGGAATG
TGGGGGGTATTTTCTGCCACTTGATGCACCTTTTTTATCGTATGGGATTGAACCTTAT
CAATATGGATTTTTAGTTGCTGGCAAAAATAATTGCTGTCAAAATATGATAGATGTTG
TTCGTCAAGCAAAGTTAGTTTAAtcacataaaaacgcgctaaaatctctaaatgatatggaggcacacATG

    BH02650 Gene: BH02650     GI: 49475076     BI number: BH02650     GOG: NOG08170     Description: hypothetical protei            TC           G  C            CG            TA CG        TA T  A       AT A  T       AT         A G  A       TG       T  T T  T      T  T      A  T AT        GC       G  G cG        TA        GC aT        GT        GC cG        TG        TG aT       |  C       GC c  T       TG       |  T g  A       AT        CG g  A       TG        GC aT       A  G      T  | gT       G  |       AT gC        CG        CG tG        TA        TA aT        AT        GT                         CTTATTTTGCAGGAATGTGGGGGGTATTTTCTGCCACTTGATGCACCTTTTTTATCGTATGGGATTGAACCTTATCAATATGGATTTTTAGTTGCTGGCAAAAATAATTGCTGTCAAAATATGATAGATGTTGTTCGTCAAGCAAAGTTAGTTTAAtcacataaaaacgcgctaaaatctctaaatgatatggaggcacacATG     ..................................................................................................................