Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:136 nt. Distance to run of Ts=0 nt. Size=14 nt. Delta G= -6.60 kcal/mol
Antiterminator: Size=35 nt. Delta G= -4.40 kcal/mol
Anti-antiterminator: Size=50 nt. Delta G= -4.66 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttagctggcaatggtcccatccaatgcgctttcgctgctattatggttttagcagcgggtgctggtattttctttgttgctaagcgctttcaggagtact
gtttatgatcttatggatgaaaaaaaatctgatgctaacaggtgcggttttagccgctttttttatagttttagccaaagctttcactcttggaaaaaag
gctgaacagcaaaagcaaacagaaaatattttaaagacaataacagcacggtttgaggtggaaaatgaagttaacaaaaaaactgatgttgatgtgcgtg
TTG
BH02840
Gene: BH02840 GI: 49475089 BI number: BH02840 GOG: ------- Description: hypothetical protei
tc
a t
gt
ta
at
tg
tg
ta
gt
| g c
| a g t
| a t a
t a a a
c a gc
a a ta
t a cg
g a tg
a a at
gt a g
gc a c
at a g tt
cg a g t a
ta at tg
t t at gc
t | at gc
cg gt cg
gc ta gc
tttttttatagttttagccaaagctttcactcttggaaaaaaggctgaacagcaaaagcaaacagaaaatattttaaagacaataacagcacggtttgaggtggaaaatgaagttaacaaaaaaactgatgttgatgtgcgtgTTG
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