                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:187 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G= -9.30 kcal/mol
Antiterminator: Size=27 nt.     Delta G= -4.80 kcal/mol
Anti-antiterminator:   Size=37 nt.     Delta G= -9.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gtactttttgtaggatctgcttttatgctaaaattatacgcttttcaggtgttaattatttgatttctgataaagttacgagctttcagggttaaagaga
gttcagctttttattgttctctttatattccatcccataaaatagttaaaatatgattttaaattaataactaagaaaacgaatttccgggtgattttgc
atcaccgtgtaaaaagtgcgataaagaaagtcatgagaaaattttctttctttattgcattgagagttttcaaaatctttaaaaagtataaaaaatcaga
ATG

    BH04820 Gene: BH04820     GI: 49475277     BI number: BH04820     GOG: COG0350,COG2169     Description: Methyltransferase (fragment                       t ta                 g  t t  t                g  a at                 g  a at                 a  a tg         c        cg ta       a  g       ta gt       t  a       tg t  t       tg        ta gt        gc        cg gc        at        gt at        at        at cg       a  |       gc ta       t  |      c  | |  t       at       a  | ta        gc        ta ta        ta        tg ta        cg        gc cg        tg        at gt        tg        at                         tttattgttctctttatattccatcccataaaatagttaaaatatgattttaaattaataactaagaaaacgaatttccgggtgattttgcatcaccgtgtaaaaagtgcgataaagaaagtcatgagaaaattttctttctttattgcattgagagttttcaaaatctttaaaaagtataaaaaatcagaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG0350 Methylated DNA-protein cysteine methyltransferase ... can be seen here [F] COG2169 Adenosine deaminase ... can be seen here     ..................................................................................................................