                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:187 nt.     Distance to run of Ts=1 nt.   Size=33 nt.     Delta G=-10.10 kcal/mol
Antiterminator: Size=14 nt.     Delta G= -3.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GATCAGATAAAGATGAAAAAATATCAATAAAATAACCATCCTCTCTTTTGCCGATGAG
AAAATCAGCAAGAACCTTTCCTTGTGGAGATAAAAGGGCTCCAGGGAAAATTTCTTGT
AGACCGATTTTTTTGACATCTGTTGTGATAAGGGCTTGCAGAAAATGTGTTGCTTCTT
CACCCGTAACTTTAATAATCTTACGGTTTTTTAAGCAAATGGCATTTGGCTTCTCAAT
CATggttattgcctttctgctcaaagttacataatcgataaatgaggtgatattgaaggagtacggttATG

    pyrC1 Gene: pyrC1     GI: 49475311     BI number: BH05160     GOG: COG0044     Description: Dihydroorotas             A           A  A           A  G           T  G           A  G            GC            AT            GC            GC            TA           G  | TG       T  | T  T       TG CG        CG CG        CG TA        TA TG        TA TA        TA             ATTTCTTGTAGACCGATTTTTTTGACATCTGTTGTGATAAGGGCTTGCAGAAAATGTGTTGCTTCTTCACCCGTAACTTTAATAATCTTACGGTTTTTTAAGCAAATGGCATTTGGCTTCTCAATCATggttattgcctttctgctcaaagttacataatcgataaatgaggtgatattgaaggagtacggttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG0044 Dihydroorotase and related cyclic amidohydrolases ... can be seen here     ..................................................................................................................