Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance from promoter:43 nt. Distance to gene:158 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-14.40 kcal/mol
Antiterminator: Distance from promoter:36 nt. Size=16 nt. Delta G= -3.00 kcal/mol
Anti-antiterminator: Size=75 nt. Delta G= -8.42 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGAGA-GTTAAT. It has a score value of 64.26 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAGAGTTTAGCCGAATTGGGGGTTAATCGTTGAttttaaaatatatttcatttactcatctttgaggattgc
ctttctcttaaaagagagaggctttattgttctctcatgatagacatgaacagagtgtgaaatgtgtcagtcatttgggaggagtagtctaactaaaaga
gctgcaaaattttttgcaatgcattgatgttaaatgagaaaacaataatattcaaatttattttttaagaagaaagtaaaaacaATG
pnbA
Gene: pnbA GI: 49475401 BI number: BH06130 GOG: ------- Description: Nitroreductas
TT
A G
A G
G G
CG
CG
GT
AT
TA
TA
| T
| C
| G
| T
| T
| G
| A
| t
| t
| t
| t
| a
| a
| a
| a
| t
| a
| t
| a
| t
| t
| t
| c
| a
| t
| t
| t
Ta
Gc
At
Gc aa
| a t a
At ta
Gc cg
T t gc ta
T t t c cg
T | t t ta
At at tg
Tg gt ta
Ta gc cg
Tg at cg
Cg gc gc
tttattgttctctcatgatagacatgaacagagtgtgaaatgtgtcagtcatttgggaggagtagtctaactaaaagagctgcaaaattttttgcaatgcattgatgttaaatgagaaaacaataatattcaaatttattttttaagaagaaagtaaaaacaATG
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