Gene putatively regulated by attenuation in B_henselae_Houston-1
Characteristics of the secondary structures
Terminator: Distance to gene:114 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G=-15.70 kcal/mol
Antiterminator: Size=38 nt. Delta G= -7.20 kcal/mol
Anti-antiterminator: Size=64 nt. Delta G= -9.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GAAATCATCAGAACAAAATCCGGAAAAAGGTGAAGAATCTTTAAAAAAATCCATAATT
TTCACAAGCTCATCAGCTTTAACATCTCTCATTTCCTTATTAGGATCAAGATTGACAA
TATTAGATATAGCTGGTCTGCGTACTCCAAGATGGGCCGCAAGTTTTGCTTGACTGCC
ACGGCCCATTTTATCGAGTTCTTGCTTTATCCAAATTTTTAGCTCTCTTTGTTTAACC
ATACTTGAGTTATTTATCATtttttaaaaccttacaatattaaaaaacataaaaatacgtttatcgtaTTG
BH06940 --- BH06950
Gene: BH06940 GI: 49475477 BI number: BH06940 GOG: ------- Description: hypothetical genomic island protein
Gene: BH06950 GI: 49475478 BI number: BH06950 GOG: ------- Description: hypothetical protei
AT
T T
TA
CG
CG
TA
T T
T C
A A
C |
TA
CG
TA
| T
| T
| G
| A
| C
| A
| A G
| T A A
| A A T
| T CG GC
| T CG T T
| A TG T T
CG C C TG
TA A | TA
AT T | GC
C A GC AT
A T CG | G
A | GC | C
T | TA A C
T | C A C A
TA T G GC
CG GT CG
GC GT CG
AT | T GC
CG T T GC
TG CG GC
AT GC TA
TTTTATCGAGTTCTTGCTTTATCCAAATTTTTAGCTCTCTTTGTTTAACCATACTTGAGTTATTTATCATtttttaaaaccttacaatattaaaaaacataaaaatacgtttatcgtaTTG
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