                                                                        Gene putatively regulated by attenuation in B_henselae_Houston-1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:120 nt.     Distance to run of Ts=1 nt.   Size=21 nt.     Delta G= -6.40 kcal/mol
Antiterminator: Size=77 nt.     Delta G=-10.70 kcal/mol
Anti-antiterminator:   Size=56 nt.     Delta G= -9.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atgtgcaacaaagcatttaactacagtggaaatctaatcggttattgataaaacagcagttttttctgtaagaagattttatgtaacgcatattttgcga
tgattatgtttttgaagagttgaatttcttctttgttattaaatgttgttttcatctttgatgctatcagagatatcttttgcatattgactgtaaaaaa
gtaccttaataattcaattgagagcattcgtgttaacttttttctattcttttattgagcacagtggaacaaactaaattaaatgatgaaaagtgaaatt
ATG

    glpD Gene: glpD     GI: 49475573     BI number: BH08080     GOG: COG0578     Description: Glycerol-3-phosphate dehydrogenas            ga           t  a           t  t            gt            at            gc            at            at            gc           |  t           |  t           |  t           |  g           |  t   t       |  t a  t      |  a t  t      t  t at       t  t cg        ta gc        ta cg        ta a  |       gt a  |       tg t  |       at g  |      |  t ta       |  g at       |  t tg       t  t ta       t  t |  t       at t  t       gc ta        ta at        at g  g       gc at       c  t        c at       g  t      g  t gt       t  t       ta at       t  g       at at       t  |       gc tg       t  |       ta g  a      a  |       tg ta        ta        ta cg        at        cg ta        cg        ta tg        gc        at                         atcttttgcatattgactgtaaaaaagtaccttaataattcaattgagagcattcgtgttaacttttttctattcttttattgagcacagtggaacaaactaaattaaatgatgaaaagtgaaattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0578 Glycerol-3-phosphate dehydrogenase ... can be seen here     ..................................................................................................................